Issue Report Checklist

• [ x] Searched the issues page for similar reports
• [ x] Read the relevant sections of the Spyder Troubleshooting Guide and followed its advice
• [ x] Reproduced the issue after updating with conda update spyder (or pip, if not using Anaconda)
• Could not reproduce inside jupyter qtconsole (if console-related)
• [ x] Tried basic troubleshooting (if a bug/error)
  • [ x] Restarted Spyder
  • [ x] Reset preferences with spyder --reset
  • [ x] Reinstalled the latest version of Anaconda
  • [ x] Tried the other applicable steps from the Troubleshooting Guide
• [x ] Completed the Problem Description, Steps to Reproduce and Version sections below

Problem Description

After uninstalling and re installing Anaconda I ran spyder 5.1.5 with no errors. I ran ‘conda update anaconda’ to update spyder to version 5.2.2. now when I run spyder I get the error: You have missing dependencies

Mandatory

rtree >=0.9.7 : None (NOK)

What steps reproduce the problem?

1. launching spyder

What is the expected output? What do you see instead?

No error

Paste Traceback/Error Below (if applicable)

PASTE TRACEBACK HERE

Versions

Spyder 5.2.2 Python 3.9.7 64-bit | Qt 5.12.9 | PyQt5 5.12.3 | Windows 10

Dependencies

# Mandatory:
atomicwrites >=1.2.0          :  1.4.0 (OK)
chardet >=2.0.0               :  4.0.0 (OK)
cloudpickle >=0.5.0           :  2.0.0 (OK)
cookiecutter >=1.6.0          :  1.7.3 (OK)
diff_match_patch >=20181111   :  20200713 (OK)
intervaltree >=3.0.2          :  3.0.2 (OK)
IPython >=7.6.0;<8.0.0        :  7.31.1 (OK)
jedi >=0.17.2;<0.19.0         :  0.18.1 (OK)
jellyfish >=0.7               :  0.9.0 (OK)
jsonschema >=3.2.0            :  4.4.0 (OK)
keyring >=17.0.0              :  23.4.0 (OK)
nbconvert >=4.0               :  6.4.2 (OK)
numpydoc >=0.6.0              :  1.2 (OK)
paramiko >=2.4.0              :  2.9.2 (OK)
parso >=0.7.0;<0.9.0          :  0.8.3 (OK)
pexpect >=4.4.0               :  4.8.0 (OK)
pickleshare >=0.4             :  0.7.5 (OK)
psutil >=5.3                  :  5.9.0 (OK)
pygments >=2.0                :  2.11.2 (OK)
pylint >=2.5.0                :  2.12.2 (OK)
pyls_spyder >=0.4.0           :  0.4.0 (OK)
pylsp >=1.3.2;<1.4.0          :  1.3.3 (OK)
pylsp_black >=1.0.0           :  1.1.0 (OK)
qdarkstyle =3.0.2             :  3.0.2 (OK)
qstylizer >=0.1.10            :  0.2.1 (OK)
qtawesome >=1.0.2             :  1.1.1 (OK)
qtconsole >=5.2.1;<5.3.0      :  5.2.2 (OK)
qtpy >=1.5.0                  :  2.0.1 (OK)
rtree >=0.9.7                 :  None (NOK)
setuptools >=49.6.0           :  59.8.0 (OK)
sphinx >=0.6.6                :  3.5.4 (OK)
spyder_kernels >=2.2.1;<2.3.0 :  2.2.1 (OK)
textdistance >=4.2.0          :  4.2.2 (OK)
three_merge >=0.1.1           :  0.1.1 (OK)
watchdog >=0.10.3             :  2.1.6 (OK)
zmq >=17                      :  22.3.0 (OK)

# Optional:
cython >=0.21                 :  0.29.27 (OK)
matplotlib >=2.0.0            :  3.5.1 (OK)
numpy >=1.7                   :  1.21.5 (OK)
pandas >=1.1.1                :  1.4.1 (OK)
scipy >=0.17.0                :  1.8.0 (OK)
sympy >=0.7.3                 :  1.9 (OK)