scipy.interpolate.gridata speed issues
See original GitHub issueI am trying to plot heatmap with three variables x, y and z, each with vector length of 932826. The time taken with the function below is 28 seconds, with a bin size of 10 on each x and y
When debugging I see that the maximum time consumed is while using the griddata function. So, I was wondering if there are any alternatives that I can use instead of griddata to make the interpolation quicker
import numpy as np
import matplotlib.pyplot as plt
import time
from scipy.interpolate import griddata
import os
x = np.loadtxt(savepath + '\\' + 'x.csv', delimiter=',')
y = np.loadtxt(savepath + '\\' + 'y.csv', delimiter=',')
z = np.loadtxt(savepath + '\\' + 'z.csv', delimiter=',')
x_linspace = 10
y_linspace = 10
xi = np.linspace(min(x), max(x), x_linspace)
yi = np.linspace(min(y), max(y), y_linspace)
start = time.time()
zi = griddata((x, y), z, (xi[None, :], yi[:, None]), method='linear')
print('Time elapsed = ', time.time()-start)
Issue Analytics
- State:
- Created 2 years ago
- Comments:7 (4 by maintainers)
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The new version of RBFInterpolator has a parameter to only use n-neighbouring points.
For the development version see: https://scipy.github.io/devdocs/dev/contributor/contributor_toc.html
Where can I find the developement version ? Sorry I am bit new to GitHub