OSError: Unable to open file (File signature not found)
See original GitHub issueI think this is the same bug as #142.
I am trying to load a MATLAB generated data file into Jupyter using h5py. The file definitely exists. Is this also an older HDF4 format? How can I tell?
import numpy as np, h5py
import os.path
filename1 = r"input\train_1\1_1_0.mat"
if os.path.isfile(filename1) and os.access(filename1, os.R_OK):
f = h5py.File(filename1,'r')
else:
print("Either file is missing or is not readable")
And the error:
---------------------------------------------------------------------------
OSError Traceback (most recent call last)
<ipython-input-21-dc964679d992> in <module>()
5
6 if os.path.isfile(filename1) and os.access(filename1, os.R_OK):
----> 7 f = h5py.File(filename1,'r')
8 else:
9 print("Either file is missing or is not readable")
C:\Users\reina\Anaconda3\lib\site-packages\h5py\_hl\files.py in __init__(self, name, mode, driver, libver, userblock_size, swmr, **kwds)
270
271 fapl = make_fapl(driver, libver, **kwds)
--> 272 fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr)
273
274 if swmr_support:
C:\Users\reina\Anaconda3\lib\site-packages\h5py\_hl\files.py in make_fid(name, mode, userblock_size, fapl, fcpl, swmr)
90 if swmr and swmr_support:
91 flags |= h5f.ACC_SWMR_READ
---> 92 fid = h5f.open(name, flags, fapl=fapl)
93 elif mode == 'r+':
94 fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
h5py\_objects.pyx in h5py._objects.with_phil.wrapper (C:\aroot\work\h5py\_objects.c:2579)()
h5py\_objects.pyx in h5py._objects.with_phil.wrapper (C:\aroot\work\h5py\_objects.c:2538)()
h5py\h5f.pyx in h5py.h5f.open (C:\aroot\work\h5py\h5f.c:1813)()
OSError: Unable to open file (File signature not found)
Thanks.
Issue Analytics
- State:
- Created 7 years ago
- Reactions:9
- Comments:11 (1 by maintainers)
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I was facing the same issue with my .h5 file. And the problem was that I was not downloading the .h5 file correctly.
I was doing filename.h5->right_click->save link as, which was not downloading the file correctly(or may be the file was getting corrupted). Instead of doing that I downloaded the file as : selected the checkbox with filename.h5 and clicked on download and after that my code worked.
May be this help the one’s who are doing the same mistake.
For reference: for anyone else getting this issue with a
.matfile, it is likely because the file was generated with an older version of MATLAB before it was switched over to using HDF5. See https://stackoverflow.com/questions/4950630/matlab-differences-between-mat-versionsThe solution for these older mat files is to read it with something like
scipy.io.loadmat: https://docs.scipy.org/doc/scipy-0.19.0/reference/generated/scipy.io.loadmat.html